NCI Cancer Research Data Commons: Cloud-Based Analytic Resources.

David Pot¹, Zelia Worman², Alexander Baumann³, Shirish Pathak⁴, Rowan Beck², Erin Beck⁵, Katherine Thayer³, Tanja M Davidsen⁵, Erika Kim⁵, Brandi Davis-Dusenbery², John Otridge⁴, Todd Pihl⁴, , Jill S Barnholtz-Sloan^5,6, Anthony R Kerlavage⁵

¹General Dynamics Information Technology, Falls Church, Virginia.

²Velsera (Seven Bridges), Charlestown, Massachusetts.

³Broad Institute, Cambridge, Massachusetts.

⁴Frederick National Laboratory for Cancer Research, Frederick, Maryland.

⁵Center for Biomedical Informatics and Information Technology, NCI, Rockville, Maryland.

⁶Trans Divisional Research Program, Division of Cancer Epidemiology and Genetics, NCI, Rockville, Maryland.

PubMed PMC DOI PDF

Abstract

The NCI's Cloud Resources (CR) are the analytical components of the Cancer Research Data Commons (CRDC) ecosystem. This review describes how the three CRs (Broad Institute FireCloud, Institute for Systems Biology Cancer Gateway in the Cloud, and Seven Bridges Cancer Genomics Cloud) provide access and availability to large, cloud-hosted, multimodal cancer datasets, as well as offer tools and worksp…

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